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ligation enhancer  (New England Biolabs)


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    Structured Review

    New England Biolabs ligation enhancer
    Ligation Enhancer, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 97/100, based on 3123 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/ligation+enhancer/NEBNext+Multi+Olig+IL+96+Dual+index+prim/bio_rxiv__64898__2026__03__26__714241-204-27-29
    Average 97 stars, based on 3123 article reviews
    ligation enhancer - by Bioz Stars, 2026-10
    97/100 stars

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    Related Articles

    Ligation:

    Article Title: 3D genome organization shapes DNA damage susceptibility to platinum-based drugs
    Article Snippet: The fragmented genomic DNA (∼2 μg) was used for end repair, 5′ phosphorylation, and dA-Tailing using 3 μl of End Prep Enzyme Mix and 7 μl of End Prep Reaction Buffer (NEB #E7546 or as included in NEB #E7645), at 20°C for 30 min and then 65°C for 30 min, before cooling down to room temperature. .. Following this, annealed AD1 adapter (500 pmol) was ligated to End Prepped DNA with 30 μl of Ligation Master Mix and 1 μl of Ligation Enhancer (NEB #E7595 or as included in NEB #E7645) at 16°C overnight. ..

    Article Title: An i-motif-regulated enhancer, eRNA and adjacent lncRNA affect Lhb expression through distinct mechanisms in a sex-specific context.
    Article Snippet: The fragmented DNA was end-repaired and dA-tailed (NEBNext® UltraTM II End Repair/dA-Tailing Module; NEB #E7546), and 5′-end dephosphorylated with calf intestinal alkaline phosphatase (New England Biolabs, M0525) for 1 h at 37 °C. .. The DNA was purified with 1x Ampure XP beads, eluted in 60 μl of water, and then ligated with the Illumina adapter using the NEBNext Ultra II Ligation Module, with 2.5 μl NEBNext Illumina adapter (final 0.4 μM), 30 μl NEBNext Ultra II Ligation Master Mix, and 1 μl of Ligation Enhancer, at 20 °C for 15 min, followed by treatment with 3 μl of USER Enzyme (NEB) at 37 °C for 15 min. To release the unligated strand of the adapter, the DNA was denatured at 95 °C for 2 min and cleaned with 1x AmpureXP beads. ..

    Article Title: An i-motif-regulated enhancer, eRNA and adjacent lncRNA affect Lhb expression through distinct mechanisms in a sex-specific context
    Article Snippet: The fragmented DNA was end-repaired and dA-tailed (NEBNext ® UltraTM II End Repair/dA-Tailing Module; NEB #E7546), and 5′-end dephosphorylated with calf intestinal alkaline phosphatase (New England Biolabs, M0525) for 1 h at 37 °C. .. The DNA was purified with 1x Ampure XP beads, eluted in 60 μl of water, and then ligated with the Illumina adapter using the NEBNext Ultra II Ligation Module, with 2.5 μl NEBNext Illumina adapter (final 0.4 μM), 30 μl NEBNext Ultra II Ligation Master Mix, and 1 μl of Ligation Enhancer, at 20 °C for 15 min, followed by treatment with 3 μl of USER Enzyme (NEB) at 37 °C for 15 min. To release the unligated strand of the adapter, the DNA was denatured at 95 °C for 2 min and cleaned with 1x AmpureXP beads. ..

    Article Title: Identification of Parkinson’s disease-associated regulatory variants in human dopaminergic neurons reveals modulators of SCARB2 and BAG3 expression
    Article Snippet: The reaction was carried on in a Analytik Jena Biometra thermocycler with the heated lid ON and the following program: 30 minutes at 20°C, 30 minutes at 65°C and hold at 4°C. .. Addition of indexes was performed by adding 15 μl of Blunt/TA Ligase master mix (NEB E6440S), 2.5 μl of NEBNext Adaptor (NEB E6440S) and 1.0 μl of ligation enhancer (NEB E6440S) and was incubated at 20°C for 15 minutes in a Analytik Jena Biometra thermocycler. .. Next, 3 μl of USER enzyme (NEB E6440S) was added to the reaction and was incubated at 37°C for 15 minutes in a Analytik Jena Biometra thermocycler.

    Article Title: Loop Extrusion Accelerates Long-Range Enhancer-Promoter Searches in Living Embryos
    Article Snippet: Biotin labeled DNA were then extracted by binding to Streptavidin beads (Dynabeads C1-Invitrogen Cat no. 65-001). .. The DNA ends were processed for adapter ligation by treatment with 3.5 μl of End Prep Reaction buffer and 1.5 μl End Prep enzyme mix (NEB-E7645S) in a 30 μl reaction incubate at 20 °C for 30 min and then at 65 °C for 30 min. Adapter ligation was then performed by the addition of 0.5 μl Illumina adapter, 15 μl of Ultra II Ligation Master Mix and 0.5 μl Ligation Enhancer (NEB-E7645S) and incubated for 30 min at 20 °C and then for 15 min at 37 °C following the addition of USER enzyme. ..

    Article Title: Extensive transmission and variation in a functional receptor for praziquantel resistance in endemic Schistosoma mansoni
    Article Snippet: .. Adaptor ligated libraries were prepared by adding 30 μL of ligation mix, 1 μL ligation enhancer (New England BioLabs), 0.9 μL nuclease-free water (Ambion) and 0.1 μL duplexed adapters to each well followed by incubation for 20 min at 20°C. ..

    Article Title: Methyl-CODEC enables simultaneous methylation and duplex sequencing
    Article Snippet: Subsequently, DNA purification was performed using 1.8X AMPure XP beads according to the manufacturer’s protocol (Beckman Coulter), followed by elution in 60 μl of low TE buffer. .. Adaptor ligation was performed by adding 30 μl of Ligation Master Mix, 1 μl of Ligation Enhancer, and 3 μl of 5′-deadenylase (NEB, Catalog no. M0331S) to the 60 μl end-prepped product. .. Instead of using Illumina adaptors, we used 2.5 μl of 500 nM freshly diluted Methyl-CODEC quadruplex adaptor, and the incubation time was increased to 1 hour at 20°C.

    Article Title: Splint nucleic acid molecule for cyclizing single-stranded nucleic acid molecule and use thereof
    Article Snippet: .. 9) Cyclization A cyclization reaction mixture containing 12 μl ligation buffer, 1.2 μl ligation Enhancer, 0.4 μl T4 DNA ligase (NEB, 400 U/μl) and 36.4 μl NF water was formulated, which was added into 70 μl of the denatured DNA solution obtained in 8) and performed the cyclization reaction on the PCR machine according to the procedure of 37° C. for 60 mins and holding at 4° C. 10) Digestion A digestion reaction mixture containing 0.8 μl 10× digestion buffer, 3.9 μl exonuclease I, 1.3 μl exonuclease HI and 2 μl NE water was formulated, which was added into 120 μl of cyclization reaction solution obtained in 9) and performed the digestion reaction on the PCR machine according to the procedure: 37° C. 30 mins 4° C. holding Addtion of 15 μl stop buffer to stop the digestion reaction 11) Purification of Digested Product Ampure XP beads in a usage amount of 1.2× (170 μl) were used for purification of the digested product. ..

    Purification:

    Article Title: An i-motif-regulated enhancer, eRNA and adjacent lncRNA affect Lhb expression through distinct mechanisms in a sex-specific context.
    Article Snippet: The fragmented DNA was end-repaired and dA-tailed (NEBNext® UltraTM II End Repair/dA-Tailing Module; NEB #E7546), and 5′-end dephosphorylated with calf intestinal alkaline phosphatase (New England Biolabs, M0525) for 1 h at 37 °C. .. The DNA was purified with 1x Ampure XP beads, eluted in 60 μl of water, and then ligated with the Illumina adapter using the NEBNext Ultra II Ligation Module, with 2.5 μl NEBNext Illumina adapter (final 0.4 μM), 30 μl NEBNext Ultra II Ligation Master Mix, and 1 μl of Ligation Enhancer, at 20 °C for 15 min, followed by treatment with 3 μl of USER Enzyme (NEB) at 37 °C for 15 min. To release the unligated strand of the adapter, the DNA was denatured at 95 °C for 2 min and cleaned with 1x AmpureXP beads. ..

    Article Title: An i-motif-regulated enhancer, eRNA and adjacent lncRNA affect Lhb expression through distinct mechanisms in a sex-specific context
    Article Snippet: The fragmented DNA was end-repaired and dA-tailed (NEBNext ® UltraTM II End Repair/dA-Tailing Module; NEB #E7546), and 5′-end dephosphorylated with calf intestinal alkaline phosphatase (New England Biolabs, M0525) for 1 h at 37 °C. .. The DNA was purified with 1x Ampure XP beads, eluted in 60 μl of water, and then ligated with the Illumina adapter using the NEBNext Ultra II Ligation Module, with 2.5 μl NEBNext Illumina adapter (final 0.4 μM), 30 μl NEBNext Ultra II Ligation Master Mix, and 1 μl of Ligation Enhancer, at 20 °C for 15 min, followed by treatment with 3 μl of USER Enzyme (NEB) at 37 °C for 15 min. To release the unligated strand of the adapter, the DNA was denatured at 95 °C for 2 min and cleaned with 1x AmpureXP beads. ..

    Article Title: Splint nucleic acid molecule for cyclizing single-stranded nucleic acid molecule and use thereof
    Article Snippet: .. 9) Cyclization A cyclization reaction mixture containing 12 μl ligation buffer, 1.2 μl ligation Enhancer, 0.4 μl T4 DNA ligase (NEB, 400 U/μl) and 36.4 μl NF water was formulated, which was added into 70 μl of the denatured DNA solution obtained in 8) and performed the cyclization reaction on the PCR machine according to the procedure of 37° C. for 60 mins and holding at 4° C. 10) Digestion A digestion reaction mixture containing 0.8 μl 10× digestion buffer, 3.9 μl exonuclease I, 1.3 μl exonuclease HI and 2 μl NE water was formulated, which was added into 120 μl of cyclization reaction solution obtained in 9) and performed the digestion reaction on the PCR machine according to the procedure: 37° C. 30 mins 4° C. holding Addtion of 15 μl stop buffer to stop the digestion reaction 11) Purification of Digested Product Ampure XP beads in a usage amount of 1.2× (170 μl) were used for purification of the digested product. ..

    Incubation:

    Article Title: Identification of Parkinson’s disease-associated regulatory variants in human dopaminergic neurons reveals modulators of SCARB2 and BAG3 expression
    Article Snippet: The reaction was carried on in a Analytik Jena Biometra thermocycler with the heated lid ON and the following program: 30 minutes at 20°C, 30 minutes at 65°C and hold at 4°C. .. Addition of indexes was performed by adding 15 μl of Blunt/TA Ligase master mix (NEB E6440S), 2.5 μl of NEBNext Adaptor (NEB E6440S) and 1.0 μl of ligation enhancer (NEB E6440S) and was incubated at 20°C for 15 minutes in a Analytik Jena Biometra thermocycler. .. Next, 3 μl of USER enzyme (NEB E6440S) was added to the reaction and was incubated at 37°C for 15 minutes in a Analytik Jena Biometra thermocycler.

    Article Title: Loop Extrusion Accelerates Long-Range Enhancer-Promoter Searches in Living Embryos
    Article Snippet: Biotin labeled DNA were then extracted by binding to Streptavidin beads (Dynabeads C1-Invitrogen Cat no. 65-001). .. The DNA ends were processed for adapter ligation by treatment with 3.5 μl of End Prep Reaction buffer and 1.5 μl End Prep enzyme mix (NEB-E7645S) in a 30 μl reaction incubate at 20 °C for 30 min and then at 65 °C for 30 min. Adapter ligation was then performed by the addition of 0.5 μl Illumina adapter, 15 μl of Ultra II Ligation Master Mix and 0.5 μl Ligation Enhancer (NEB-E7645S) and incubated for 30 min at 20 °C and then for 15 min at 37 °C following the addition of USER enzyme. ..

    Article Title: Extensive transmission and variation in a functional receptor for praziquantel resistance in endemic Schistosoma mansoni
    Article Snippet: .. Adaptor ligated libraries were prepared by adding 30 μL of ligation mix, 1 μL ligation enhancer (New England BioLabs), 0.9 μL nuclease-free water (Ambion) and 0.1 μL duplexed adapters to each well followed by incubation for 20 min at 20°C. ..

    Adapter Ligation:

    Article Title: Loop Extrusion Accelerates Long-Range Enhancer-Promoter Searches in Living Embryos
    Article Snippet: Biotin labeled DNA were then extracted by binding to Streptavidin beads (Dynabeads C1-Invitrogen Cat no. 65-001). .. The DNA ends were processed for adapter ligation by treatment with 3.5 μl of End Prep Reaction buffer and 1.5 μl End Prep enzyme mix (NEB-E7645S) in a 30 μl reaction incubate at 20 °C for 30 min and then at 65 °C for 30 min. Adapter ligation was then performed by the addition of 0.5 μl Illumina adapter, 15 μl of Ultra II Ligation Master Mix and 0.5 μl Ligation Enhancer (NEB-E7645S) and incubated for 30 min at 20 °C and then for 15 min at 37 °C following the addition of USER enzyme. ..

    Polymerase Chain Reaction:

    Article Title: Splint nucleic acid molecule for cyclizing single-stranded nucleic acid molecule and use thereof
    Article Snippet: .. 9) Cyclization A cyclization reaction mixture containing 12 μl ligation buffer, 1.2 μl ligation Enhancer, 0.4 μl T4 DNA ligase (NEB, 400 U/μl) and 36.4 μl NF water was formulated, which was added into 70 μl of the denatured DNA solution obtained in 8) and performed the cyclization reaction on the PCR machine according to the procedure of 37° C. for 60 mins and holding at 4° C. 10) Digestion A digestion reaction mixture containing 0.8 μl 10× digestion buffer, 3.9 μl exonuclease I, 1.3 μl exonuclease HI and 2 μl NE water was formulated, which was added into 120 μl of cyclization reaction solution obtained in 9) and performed the digestion reaction on the PCR machine according to the procedure: 37° C. 30 mins 4° C. holding Addtion of 15 μl stop buffer to stop the digestion reaction 11) Purification of Digested Product Ampure XP beads in a usage amount of 1.2× (170 μl) were used for purification of the digested product. ..



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